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Commit 6bf90c51 authored by Jaime Arias's avatar Jaime Arias
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Add CMake project and skeleton for tests

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...@@ -47,6 +47,7 @@ install_manifest.txt ...@@ -47,6 +47,7 @@ install_manifest.txt
compile_commands.json compile_commands.json
CTestTestfile.cmake CTestTestfile.cmake
_deps _deps
build
### CMake Patch ### ### CMake Patch ###
# External projects # External projects
...@@ -80,4 +81,8 @@ Network Trash Folder ...@@ -80,4 +81,8 @@ Network Trash Folder
Temporary Items Temporary Items
.apdisk .apdisk
# Documentation
docs/html
docs/latex
# End of https://www.gitignore.io/api/c++,cmake # End of https://www.gitignore.io/api/c++,cmake
CMakeLists.txt 0 → 100644
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# Specify the minimum version for CMake
cmake_minimum_required(VERSION 3.0.0)
# Project information
project(factor-oracle CXX)
# Source folder
add_subdirectory(src)
# Test folder
option(BUILD_TESTS "Build Tests" ON)
if(BUILD_TESTS)
enable_testing()
add_subdirectory(tests)
endif(BUILD_TESTS)
# Documentation folder
option(BUILD_DOCS "Build Documentation")
if(BUILD_DOCS)
add_subdirectory(docs)
endif(BUILD_DOCS)
CONTRIBUTING.md 0 → 100644
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# Style Guide
We use the Google C++ Style Guide that can be found at https://google.github.io/styleguide/cppguide.html
# Testing
We use the test framework [catch2](https://github.com/catchorg/Catch2) for writing and running the test cases.
# Documentation
We use [Doxygen](http://www.doxygen.org/) for writing and generating the documentation.
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# Specify the minimum version for CMake
cmake_minimum_required(VERSION 3.0.0)
# project information
project(factor-oracle_docs)
# check if Doxygen is installed
find_package(Doxygen)
if (DOXYGEN_FOUND)
# set input and output files
set(DOXYGEN_IN Doxyfile)
set(DOXYGEN_OUT ${CMAKE_CURRENT_BINARY_DIR}/Doxyfile)
# request to configure the file
configure_file(${DOXYGEN_IN} ${DOXYGEN_OUT} @ONLY)
# note the option ALL which allows to build the docs together with the application
add_custom_target(doxygen ALL
COMMAND ${DOXYGEN_EXECUTABLE} ${DOXYGEN_OUT}
WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}
COMMENT "Generating API documentation with Doxygen"
VERBATIM)
else (DOXYGEN_FOUND)
message("Doxygen need to be installed to generate the doxygen documentation")
endif (DOXYGEN_FOUND)
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<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "https://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
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<a href="#var-members">Variables</a> </div>
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<div class="title">FactorOracle.cpp File Reference</div> </div>
</div><!--header-->
<div class="contents">
<p>A file that contains the functions needed for the creation of a Factor Oracle.
<a href="#details">More...</a></p>
<div class="textblock"><code>#include &quot;<a class="el" href="_factor_oracle_8h_source.html">FactorOracle.h</a>&quot;</code><br />
</div><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="var-members"></a>
Variables</h2></td></tr>
<tr class="memitem:a5eb6eb3bacab6fd40c8df6d435e06209"><td class="memItemLeft" align="right" valign="top"><a id="a5eb6eb3bacab6fd40c8df6d435e06209"></a>
int&#160;</td><td class="memItemRight" valign="bottom"><b>phi</b></td></tr>
<tr class="separator:a5eb6eb3bacab6fd40c8df6d435e06209"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ab66ed8e0098c0a86b458672a55a9cca9"><td class="memItemLeft" align="right" valign="top"><a id="ab66ed8e0098c0a86b458672a55a9cca9"></a>
int&#160;</td><td class="memItemRight" valign="bottom"><b>k</b></td></tr>
<tr class="separator:ab66ed8e0098c0a86b458672a55a9cca9"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:aa2fc876c0cc6ed51259586d7bea34f0f"><td class="memItemLeft" align="right" valign="top"><a id="aa2fc876c0cc6ed51259586d7bea34f0f"></a>
int&#160;</td><td class="memItemRight" valign="bottom"><b>fo_iter</b></td></tr>
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</table>
<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
<div class="textblock"><p>A file that contains the functions needed for the creation of a Factor Oracle. </p>
<p>Five main functions: FactorOracleStart, AddLetter, LengthCommonSuffix, FindBetter and FOGenerate. </p>
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<a href="#nested-classes">Classes</a> &#124;
<a href="#define-members">Macros</a> </div>
<div class="headertitle">
<div class="title">FactorOracle.h File Reference</div> </div>
</div><!--header-->
<div class="contents">
<p>A file that contains the definitions of the classes needed for the creation of a Factor Oracle.
<a href="#details">More...</a></p>
<div class="textblock"><code>#include &lt;iostream&gt;</code><br />
<code>#include &lt;new&gt;</code><br />
<code>#include &lt;string&gt;</code><br />
<code>#include &lt;vector&gt;</code><br />
<code>#include &lt;variant&gt;</code><br />
<code>#include &lt;random&gt;</code><br />
<code>#include &lt;algorithm&gt;</code><br />
</div>
<p><a href="_factor_oracle_8h_source.html">Go to the source code of this file.</a></p>
<table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="nested-classes"></a>
Classes</h2></td></tr>
<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class &#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_single_transition.html">SingleTransition</a></td></tr>
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#define&#160;</td><td class="memItemRight" valign="bottom"><b>R</b>&#160;&#160;&#160;10</td></tr>
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#define&#160;</td><td class="memItemRight" valign="bottom"><b>RAND_MAX</b>&#160;&#160;&#160;0x7fffffff</td></tr>
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<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
<div class="textblock"><p>A file that contains the definitions of the classes needed for the creation of a Factor Oracle. </p>
<p>Three main classes: <a class="el" href="class_factor_oracle.html">FactorOracle</a>, <a class="el" href="class_state.html">State</a> and <a class="el" href="class_single_transition.html">SingleTransition</a>. </p>
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<a href="_factor_oracle_8h.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno"> 1</span>&#160;<span class="comment">//</span></div><div class="line"><a name="l00002"></a><span class="lineno"> 2</span>&#160;<span class="comment">// Created by MARIA PAULA CARRERO on 7/16/19.</span></div><div class="line"><a name="l00003"></a><span class="lineno"> 3</span>&#160;<span class="comment">//</span></div><div class="line"><a name="l00004"></a><span class="lineno"> 4</span>&#160;<span class="preprocessor">#include &lt;iostream&gt;</span></div><div class="line"><a name="l00005"></a><span class="lineno"> 5</span>&#160;<span class="preprocessor">#include &lt;new&gt;</span></div><div class="line"><a name="l00006"></a><span class="lineno"> 6</span>&#160;<span class="preprocessor">#include &lt;string&gt;</span></div><div class="line"><a name="l00007"></a><span class="lineno"> 7</span>&#160;<span class="preprocessor">#include &lt;vector&gt;</span></div><div class="line"><a name="l00008"></a><span class="lineno"> 8</span>&#160;<span class="preprocessor">#include &lt;variant&gt;</span></div><div class="line"><a name="l00009"></a><span class="lineno"> 9</span>&#160;<span class="preprocessor">#include &lt;random&gt;</span></div><div class="line"><a name="l00010"></a><span class="lineno"> 10</span>&#160;<span class="preprocessor">#include &lt;algorithm&gt;</span></div><div class="line"><a name="l00011"></a><span class="lineno"> 11</span>&#160;</div><div class="line"><a name="l00012"></a><span class="lineno"> 12</span>&#160;</div><div class="line"><a name="l00013"></a><span class="lineno"> 13</span>&#160;<span class="preprocessor">#ifndef FACTORORACLESTRING_FACTORORACLE_H</span></div><div class="line"><a name="l00014"></a><span class="lineno"> 14</span>&#160;<span class="preprocessor">#define FACTORORACLESTRING_FACTORORACLE_H</span></div><div class="line"><a name="l00015"></a><span class="lineno"> 15</span>&#160;</div><div class="line"><a name="l00016"></a><span class="lineno"> 16</span>&#160;<span class="preprocessor">#define R 10</span></div><div class="line"><a name="l00017"></a><span class="lineno"> 17</span>&#160;<span class="preprocessor">#define RAND_MAX 0x7fffffff</span></div><div class="line"><a name="l00018"></a><span class="lineno"> 18</span>&#160;</div><div class="line"><a name="l00064"></a><span class="lineno"> 64</span>&#160;<span class="keyword">using namespace </span>std;</div><div class="line"><a name="l00067"></a><span class="lineno"><a class="line" href="class_single_transition.html"> 67</a></span>&#160;<span class="keyword">class </span><a class="code" href="class_single_transition.html">SingleTransition</a></div><div class="line"><a name="l00068"></a><span class="lineno"> 68</span>&#160;{</div><div class="line"><a name="l00069"></a><span class="lineno"> 69</span>&#160;<span class="keyword">public</span>:</div><div class="line"><a name="l00070"></a><span class="lineno"><a class="line" href="class_single_transition.html#a88f7e002e072ffe7bb5eeb168cf0fea6"> 70</a></span>&#160; <span class="keywordtype">int</span> <a class="code" href="class_single_transition.html#a88f7e002e072ffe7bb5eeb168cf0fea6">first_state_</a>; </div><div class="line"><a name="l00071"></a><span class="lineno"><a class="line" href="class_single_transition.html#a9d07ad3e0f9d7728919a372111313c69"> 71</a></span>&#160; <span class="keywordtype">int</span> <a class="code" href="class_single_transition.html#a9d07ad3e0f9d7728919a372111313c69">last_state_</a>; </div><div class="line"><a name="l00072"></a><span class="lineno"><a class="line" href="class_single_transition.html#ae632ebd30fd4818e999fd1009cb2a8f9"> 72</a></span>&#160; <span class="keywordtype">char</span> <a class="code" href="class_single_transition.html#ae632ebd30fd4818e999fd1009cb2a8f9">symbol_</a>; </div><div class="line"><a name="l00073"></a><span class="lineno"> 73</span>&#160;};</div><div class="line"><a name="l00074"></a><span class="lineno"> 74</span>&#160;</div><div class="line"><a name="l00081"></a><span class="lineno"><a class="line" href="class_state.html"> 81</a></span>&#160;<span class="keyword">class </span><a class="code" href="class_state.html">State</a></div><div class="line"><a name="l00082"></a><span class="lineno"> 82</span>&#160;{</div><div class="line"><a name="l00083"></a><span class="lineno"> 83</span>&#160;<span class="keyword">public</span>:</div><div class="line"><a name="l00084"></a><span class="lineno"><a class="line" href="class_state.html#a2dcf672a1560830a8f93b0e9863c6724"> 84</a></span>&#160; <span class="keywordtype">int</span> <a class="code" href="class_state.html#a2dcf672a1560830a8f93b0e9863c6724">state_</a>; </div><div class="line"><a name="l00085"></a><span class="lineno"><a class="line" href="class_state.html#afd5b3d2afbba2fc03583f76a7cb08fe8"> 85</a></span>&#160; vector &lt;SingleTransition&gt; <a class="code" href="class_state.html#afd5b3d2afbba2fc03583f76a7cb08fe8">transition_</a>; </div><div class="line"><a name="l00086"></a><span class="lineno"> 86</span>&#160; <span class="keywordtype">int</span> suffix_transition_;</div><div class="line"><a name="l00087"></a><span class="lineno"> 87</span>&#160; <span class="keywordtype">int</span> lrs_ = 0;</div><div class="line"><a name="l00088"></a><span class="lineno"> 88</span>&#160; <span class="keywordtype">void</span> singleTransitionResize(){</div><div class="line"><a name="l00089"></a><span class="lineno"> 89</span>&#160; transition_.resize(R);</div><div class="line"><a name="l00090"></a><span class="lineno"> 90</span>&#160; }</div><div class="line"><a name="l00091"></a><span class="lineno"> 91</span>&#160;};</div><div class="line"><a name="l00092"></a><span class="lineno"> 92</span>&#160;</div><div class="line"><a name="l00093"></a><span class="lineno"> 93</span>&#160;</div><div class="line"><a name="l00094"></a><span class="lineno"><a class="line" href="class_factor_oracle.html"> 94</a></span>&#160;<span class="keyword">class </span><a class="code" href="class_factor_oracle.html">FactorOracle</a></div><div class="line"><a name="l00095"></a><span class="lineno"> 95</span>&#160;{</div><div class="line"><a name="l00096"></a><span class="lineno"> 96</span>&#160;<span class="keyword">public</span>:</div><div class="line"><a name="l00097"></a><span class="lineno"><a class="line" href="class_factor_oracle.html#a6e8dacf834f9ee820818c3655d77d56d"> 97</a></span>&#160; vector &lt;State&gt; <a class="code" href="class_factor_oracle.html#a6e8dacf834f9ee820818c3655d77d56d">states_</a>; </div><div class="line"><a name="l00098"></a><span class="lineno"> 98</span>&#160; <span class="keywordtype">void</span> AddLetter(<a class="code" href="class_factor_oracle.html">FactorOracle</a>&amp; States, vector &lt;vector&lt;int&gt;&gt; &amp;T, <span class="keywordtype">int</span> i, <span class="keywordtype">string</span> word);</div><div class="line"><a name="l00099"></a><span class="lineno"> 99</span>&#160; <span class="keywordtype">int</span> LengthCommonSuffix(<a class="code" href="class_factor_oracle.html">FactorOracle</a>&amp; States, <span class="keywordtype">int</span> phi_one, <span class="keywordtype">int</span> phi_two);</div><div class="line"><a name="l00100"></a><span class="lineno"> 100</span>&#160; <span class="keywordtype">int</span> FindBetter(<a class="code" href="class_factor_oracle.html">FactorOracle</a>&amp; States, vector &lt;vector&lt;int&gt;&gt; &amp;T, <span class="keywordtype">int</span> i, <span class="keywordtype">char</span> alpha, <span class="keywordtype">string</span> word);</div><div class="line"><a name="l00101"></a><span class="lineno"> 101</span>&#160; <span class="keywordtype">string</span> FOGenerate(<a class="code" href="class_factor_oracle.html">FactorOracle</a>&amp; States, <span class="keywordtype">int</span> i, <span class="keywordtype">string</span> v, <span class="keywordtype">float</span> q);</div><div class="line"><a name="l00102"></a><span class="lineno"> 102</span>&#160; <span class="keywordtype">void</span> FactorOracleStart(<a class="code" href="class_factor_oracle.html">FactorOracle</a>&amp; OracleRelations,<span class="keywordtype">string</span> word);</div><div class="line"><a name="l00103"></a><span class="lineno"> 103</span>&#160;</div><div class="line"><a name="l00104"></a><span class="lineno"> 104</span>&#160;};</div><div class="line"><a name="l00105"></a><span class="lineno"> 105</span>&#160;</div><div class="line"><a name="l00106"></a><span class="lineno"> 106</span>&#160;</div><div class="line"><a name="l00107"></a><span class="lineno"> 107</span>&#160;</div><div class="line"><a name="l00108"></a><span class="lineno"> 108</span>&#160;<span class="preprocessor">#endif //FACTORORACLESTRING_FACTORORACLE_H</span></div><div class="ttc" id="class_single_transition_html_ae632ebd30fd4818e999fd1009cb2a8f9"><div class="ttname"><a href="class_single_transition.html#ae632ebd30fd4818e999fd1009cb2a8f9">SingleTransition::symbol_</a></div><div class="ttdeci">char symbol_</div><div class="ttdef"><b>Definition:</b> FactorOracle.h:72</div></div>
<div class="ttc" id="class_factor_oracle_html_a6e8dacf834f9ee820818c3655d77d56d"><div class="ttname"><a href="class_factor_oracle.html#a6e8dacf834f9ee820818c3655d77d56d">FactorOracle::states_</a></div><div class="ttdeci">vector&lt; State &gt; states_</div><div class="ttdef"><b>Definition:</b> FactorOracle.h:97</div></div>
<div class="ttc" id="class_state_html"><div class="ttname"><a href="class_state.html">State</a></div><div class="ttdef"><b>Definition:</b> FactorOracle.h:81</div></div>
<div class="ttc" id="class_state_html_a2dcf672a1560830a8f93b0e9863c6724"><div class="ttname"><a href="class_state.html#a2dcf672a1560830a8f93b0e9863c6724">State::state_</a></div><div class="ttdeci">int state_</div><div class="ttdef"><b>Definition:</b> FactorOracle.h:84</div></div>
<div class="ttc" id="class_factor_oracle_html"><div class="ttname"><a href="class_factor_oracle.html">FactorOracle</a></div><div class="ttdef"><b>Definition:</b> FactorOracle.h:94</div></div>
<div class="ttc" id="class_single_transition_html_a88f7e002e072ffe7bb5eeb168cf0fea6"><div class="ttname"><a href="class_single_transition.html#a88f7e002e072ffe7bb5eeb168cf0fea6">SingleTransition::first_state_</a></div><div class="ttdeci">int first_state_</div><div class="ttdef"><b>Definition:</b> FactorOracle.h:70</div></div>
<div class="ttc" id="class_state_html_afd5b3d2afbba2fc03583f76a7cb08fe8"><div class="ttname"><a href="class_state.html#afd5b3d2afbba2fc03583f76a7cb08fe8">State::transition_</a></div><div class="ttdeci">vector&lt; SingleTransition &gt; transition_</div><div class="ttdef"><b>Definition:</b> FactorOracle.h:85</div></div>
<div class="ttc" id="class_single_transition_html"><div class="ttname"><a href="class_single_transition.html">SingleTransition</a></div><div class="ttdef"><b>Definition:</b> FactorOracle.h:67</div></div>
<div class="ttc" id="class_single_transition_html_a9d07ad3e0f9d7728919a372111313c69"><div class="ttname"><a href="class_single_transition.html#a9d07ad3e0f9d7728919a372111313c69">SingleTransition::last_state_</a></div><div class="ttdeci">int last_state_</div><div class="ttdef"><b>Definition:</b> FactorOracle.h:71</div></div>
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<tr id="row_0_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="class_factor_oracle.html" target="_self">FactorOracle</a></td><td class="desc"></td></tr>
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<tr id="row_2_" class="even"><td class="entry"><span style="width:16px;display:inline-block;">&#160;</span><span class="icona"><span class="icon">C</span></span><a class="el" href="class_state.html" target="_self">State</a></td><td class="desc"></td></tr>
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<p>This is the complete list of members for <a class="el" href="class_factor_oracle.html">FactorOracle</a>, including all inherited members.</p>
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<tr class="even"><td class="entry"><a class="el" href="class_factor_oracle.html#ae10b4d001c338a73f0f44079e842e7db">AddLetter</a>(FactorOracle &amp;States, vector&lt; vector&lt; int &gt;&gt; &amp;T, int i, string word)</td><td class="entry"><a class="el" href="class_factor_oracle.html">FactorOracle</a></td><td class="entry"></td></tr>
<tr><td class="entry"><a class="el" href="class_factor_oracle.html#a070d7b00cfcb658c5d13ff275ceae01f">FactorOracleStart</a>(FactorOracle &amp;OracleRelations, string word)</td><td class="entry"><a class="el" href="class_factor_oracle.html">FactorOracle</a></td><td class="entry"></td></tr>
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<tr><td class="entry"><a class="el" href="class_factor_oracle.html#abe8c4c194b309aeeff1bc05c25563390">FOGenerate</a>(FactorOracle &amp;States, int i, string v, float q)</td><td class="entry"><a class="el" href="class_factor_oracle.html">FactorOracle</a></td><td class="entry"></td></tr>
<tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>LengthCommonSuffix</b>(FactorOracle &amp;States, int phi_one, int phi_two) (defined in <a class="el" href="class_factor_oracle.html">FactorOracle</a>)</td><td class="entry"><a class="el" href="class_factor_oracle.html">FactorOracle</a></td><td class="entry"></td></tr>
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<tr class="memitem:ae10b4d001c338a73f0f44079e842e7db"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_factor_oracle.html#ae10b4d001c338a73f0f44079e842e7db">AddLetter</a> (<a class="el" href="class_factor_oracle.html">FactorOracle</a> &amp;States, vector&lt; vector&lt; int &gt;&gt; &amp;T, int i, string word)</td></tr>
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int&#160;</td><td class="memItemRight" valign="bottom"><b>LengthCommonSuffix</b> (<a class="el" href="class_factor_oracle.html">FactorOracle</a> &amp;States, int phi_one, int phi_two)</td></tr>
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<tr class="memitem:a28d2e85676712f983b1dcba83ae07d50"><td class="memItemLeft" align="right" valign="top">int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_factor_oracle.html#a28d2e85676712f983b1dcba83ae07d50">FindBetter</a> (<a class="el" href="class_factor_oracle.html">FactorOracle</a> &amp;States, vector&lt; vector&lt; int &gt;&gt; &amp;T, int i, char alpha, string word)</td></tr>
<tr class="separator:a28d2e85676712f983b1dcba83ae07d50"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:abe8c4c194b309aeeff1bc05c25563390"><td class="memItemLeft" align="right" valign="top">string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_factor_oracle.html#abe8c4c194b309aeeff1bc05c25563390">FOGenerate</a> (<a class="el" href="class_factor_oracle.html">FactorOracle</a> &amp;States, int i, string v, float q)</td></tr>
<tr class="separator:abe8c4c194b309aeeff1bc05c25563390"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a070d7b00cfcb658c5d13ff275ceae01f"><td class="memItemLeft" align="right" valign="top">void&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_factor_oracle.html#a070d7b00cfcb658c5d13ff275ceae01f">FactorOracleStart</a> (<a class="el" href="class_factor_oracle.html">FactorOracle</a> &amp;OracleRelations, string word)</td></tr>
<tr class="separator:a070d7b00cfcb658c5d13ff275ceae01f"><td class="memSeparator" colspan="2">&#160;</td></tr>
</table><table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-attribs"></a>
Public Attributes</h2></td></tr>
<tr class="memitem:a6e8dacf834f9ee820818c3655d77d56d"><td class="memItemLeft" align="right" valign="top">vector&lt; <a class="el" href="class_state.html">State</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_factor_oracle.html#a6e8dacf834f9ee820818c3655d77d56d">states_</a></td></tr>
<tr class="separator:a6e8dacf834f9ee820818c3655d77d56d"><td class="memSeparator" colspan="2">&#160;</td></tr>
</table>
<h2 class="groupheader">Member Function Documentation</h2>
<a id="ae10b4d001c338a73f0f44079e842e7db"></a>
<h2 class="memtitle"><span class="permalink"><a href="#ae10b4d001c338a73f0f44079e842e7db">&#9670;&nbsp;</a></span>AddLetter()</h2>
<div class="memitem">
<div class="memproto">
<table class="memname">
<tr>
<td class="memname">void FactorOracle::AddLetter </td>
<td>(</td>
<td class="paramtype"><a class="el" href="class_factor_oracle.html">FactorOracle</a> &amp;&#160;</td>
<td class="paramname"><em>States</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">vector&lt; vector&lt; int &gt;&gt; &amp;&#160;</td>
<td class="paramname"><em>T</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">int&#160;</td>
<td class="paramname"><em>i</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">string&#160;</td>
<td class="paramname"><em>word</em>&#160;</td>
</tr>
<tr>
<td></td>
<td>)</td>
<td></td><td></td>
</tr>
</table>
</div><div class="memdoc">
<p>A normal member taking four arguments and returning no value.</p>
<dl class="params"><dt>Parameters</dt><dd>
<table class="params">
<tr><td class="paramname">all_states_</td><td>a reference to a <a class="el" href="class_factor_oracle.html">FactorOracle</a> class. </td></tr>
<tr><td class="paramname">T</td><td>a reference to a vector of vector of integers. </td></tr>
<tr><td class="paramname">i</td><td>an integer argument. </td></tr>
<tr><td class="paramname">word</td><td>a string argument.</td></tr>
</table>
</dd>
</dl>
<p>&lt; delta(i-1, p[i]) &lt;- i</p>
<p>&lt; k = S[i-1]</p>
<p>&lt; phi_one = i-1</p>
<p>while k &gt; -1 and delta(k,p[i]) is undefined do delta(k, p[i]) &lt;- i phi_one = k k = S[k]</p>
</div>
</div>
<a id="a070d7b00cfcb658c5d13ff275ceae01f"></a>
<h2 class="memtitle"><span class="permalink"><a href="#a070d7b00cfcb658c5d13ff275ceae01f">&#9670;&nbsp;</a></span>FactorOracleStart()</h2>
<div class="memitem">
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<td class="memname">void FactorOracle::FactorOracleStart </td>
<td>(</td>
<td class="paramtype"><a class="el" href="class_factor_oracle.html">FactorOracle</a> &amp;&#160;</td>
<td class="paramname"><em>OracleRelations</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">string&#160;</td>
<td class="paramname"><em>word</em>&#160;</td>
</tr>
<tr>
<td></td>
<td>)</td>
<td></td><td></td>
</tr>
</table>
</div><div class="memdoc">
<p>A normal member taking one argument and returning no value.</p>
<dl class="params"><dt>Parameters</dt><dd>
<table class="params">
<tr><td class="paramname">oracle_relations</td><td>a reference to a <a class="el" href="class_factor_oracle.html">FactorOracle</a> class. </td></tr>
<tr><td class="paramname">word</td><td>a string argument.</td></tr>
</table>
</dd>
</dl>
<p>&lt; S[0] = -1</p>
<p>&lt; for i &lt;- 1 to m do AddLetter(i)</p>
</div>
</div>
<a id="a28d2e85676712f983b1dcba83ae07d50"></a>
<h2 class="memtitle"><span class="permalink"><a href="#a28d2e85676712f983b1dcba83ae07d50">&#9670;&nbsp;</a></span>FindBetter()</h2>
<div class="memitem">
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<td class="memname">int FactorOracle::FindBetter </td>
<td>(</td>
<td class="paramtype"><a class="el" href="class_factor_oracle.html">FactorOracle</a> &amp;&#160;</td>
<td class="paramname"><em>States</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">vector&lt; vector&lt; int &gt;&gt; &amp;&#160;</td>
<td class="paramname"><em>T</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">int&#160;</td>
<td class="paramname"><em>i</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">char&#160;</td>
<td class="paramname"><em>alpha</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">string&#160;</td>
<td class="paramname"><em>word</em>&#160;</td>
</tr>
<tr>
<td></td>
<td>)</td>
<td></td><td></td>
</tr>
</table>
</div><div class="memdoc">
<p>A normal member taking five arguments and returning an integer value.</p>
<dl class="params"><dt>Parameters</dt><dd>
<table class="params">
<tr><td class="paramname">all_states_</td><td>a reference to a <a class="el" href="class_factor_oracle.html">FactorOracle</a> class. </td></tr>
<tr><td class="paramname">T</td><td>a reference to a vector of vector of integers. </td></tr>
<tr><td class="paramname">i</td><td>an integer argument. </td></tr>
<tr><td class="paramname">alpha</td><td>a char argument. </td></tr>
<tr><td class="paramname">word</td><td>a string argument. </td></tr>
</table>
</dd>
</dl>
<dl class="section return"><dt>Returns</dt><dd>A better state</dd></dl>
</div>
</div>
<a id="abe8c4c194b309aeeff1bc05c25563390"></a>
<h2 class="memtitle"><span class="permalink"><a href="#abe8c4c194b309aeeff1bc05c25563390">&#9670;&nbsp;</a></span>FOGenerate()</h2>
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<div class="memproto">
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<td class="memname">string FactorOracle::FOGenerate </td>
<td>(</td>
<td class="paramtype"><a class="el" href="class_factor_oracle.html">FactorOracle</a> &amp;&#160;</td>
<td class="paramname"><em>States</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">int&#160;</td>
<td class="paramname"><em>i</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">string&#160;</td>
<td class="paramname"><em>v</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">float&#160;</td>
<td class="paramname"><em>q</em>&#160;</td>
</tr>
<tr>
<td></td>
<td>)</td>
<td></td><td></td>
</tr>
</table>
</div><div class="memdoc">
<p>A normal member taking four arguments and returning a string value.</p>
<dl class="params"><dt>Parameters</dt><dd>
<table class="params">
<tr><td class="paramname">all_states_</td><td>a reference to a <a class="el" href="class_factor_oracle.html">FactorOracle</a> class. </td></tr>
<tr><td class="paramname">i</td><td>an integer argument. </td></tr>
<tr><td class="paramname">v</td><td>a string argument. </td></tr>
<tr><td class="paramname">q</td><td>a float argument. </td></tr>
</table>
</dd>
</dl>
<dl class="section return"><dt>Returns</dt><dd>The factor oracle improvisation</dd></dl>
<p>Will be used to obtain a seed for the random number engine</p>
<p>Standard mersenne_twister_engine seeded with rd()</p>
<p>float u = (float)rand() / RAND_MAX;</p>
<p>Will be used to obtain a seed for the random number engine</p>
<p>Standard mersenne_twister_engine seeded with rd() </p>
</div>
</div>
<h2 class="groupheader">Member Data Documentation</h2>
<a id="a6e8dacf834f9ee820818c3655d77d56d"></a>
<h2 class="memtitle"><span class="permalink"><a href="#a6e8dacf834f9ee820818c3655d77d56d">&#9670;&nbsp;</a></span>states_</h2>
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<td class="memname">vector&lt;<a class="el" href="class_state.html">State</a>&gt; FactorOracle::states_</td>
</tr>
</table>
</div><div class="memdoc">
<p>vector of all the states </p>
</div>
</div>
<hr/>The documentation for this class was generated from the following files:<ul>
<li><a class="el" href="_factor_oracle_8h_source.html">FactorOracle.h</a></li>
<li><a class="el" href="_factor_oracle_8cpp.html">FactorOracle.cpp</a></li>
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<tr class="even"><td class="entry"><a class="el" href="class_single_transition.html#a88f7e002e072ffe7bb5eeb168cf0fea6">first_state_</a></td><td class="entry"><a class="el" href="class_single_transition.html">SingleTransition</a></td><td class="entry"></td></tr>
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<p><code>#include &lt;<a class="el" href="_factor_oracle_8h_source.html">FactorOracle.h</a>&gt;</code></p>
<table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-attribs"></a>
Public Attributes</h2></td></tr>
<tr class="memitem:a88f7e002e072ffe7bb5eeb168cf0fea6"><td class="memItemLeft" align="right" valign="top">int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_single_transition.html#a88f7e002e072ffe7bb5eeb168cf0fea6">first_state_</a></td></tr>
<tr class="separator:a88f7e002e072ffe7bb5eeb168cf0fea6"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a9d07ad3e0f9d7728919a372111313c69"><td class="memItemLeft" align="right" valign="top">int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_single_transition.html#a9d07ad3e0f9d7728919a372111313c69">last_state_</a></td></tr>
<tr class="separator:a9d07ad3e0f9d7728919a372111313c69"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ae632ebd30fd4818e999fd1009cb2a8f9"><td class="memItemLeft" align="right" valign="top">char&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_single_transition.html#ae632ebd30fd4818e999fd1009cb2a8f9">symbol_</a></td></tr>
<tr class="separator:ae632ebd30fd4818e999fd1009cb2a8f9"><td class="memSeparator" colspan="2">&#160;</td></tr>
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<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
<div class="textblock"><p>The class <a class="el" href="class_single_transition.html">SingleTransition</a> denotes the elements that belong to each transition </p>
</div><h2 class="groupheader">Member Data Documentation</h2>
<a id="a88f7e002e072ffe7bb5eeb168cf0fea6"></a>
<h2 class="memtitle"><span class="permalink"><a href="#a88f7e002e072ffe7bb5eeb168cf0fea6">&#9670;&nbsp;</a></span>first_state_</h2>
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<td class="memname">int SingleTransition::first_state_</td>
</tr>
</table>
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<p>denotes the first state of the transition </p>
</div>
</div>
<a id="a9d07ad3e0f9d7728919a372111313c69"></a>
<h2 class="memtitle"><span class="permalink"><a href="#a9d07ad3e0f9d7728919a372111313c69">&#9670;&nbsp;</a></span>last_state_</h2>
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<td class="memname">int SingleTransition::last_state_</td>
</tr>
</table>
</div><div class="memdoc">
<p>denotes the last state of the transition </p>
</div>
</div>
<a id="ae632ebd30fd4818e999fd1009cb2a8f9"></a>
<h2 class="memtitle"><span class="permalink"><a href="#ae632ebd30fd4818e999fd1009cb2a8f9">&#9670;&nbsp;</a></span>symbol_</h2>
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<table class="memname">
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<td class="memname">char SingleTransition::symbol_</td>
</tr>
</table>
</div><div class="memdoc">
<p>denotes the symbol (letter) of the transition </p>
</div>
</div>
<hr/>The documentation for this class was generated from the following file:<ul>
<li><a class="el" href="_factor_oracle_8h_source.html">FactorOracle.h</a></li>
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<p>This is the complete list of members for <a class="el" href="class_state.html">State</a>, including all inherited members.</p>
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<tr bgcolor="#f0f0f0" class="even"><td class="entry"><b>lrs_</b> (defined in <a class="el" href="class_state.html">State</a>)</td><td class="entry"><a class="el" href="class_state.html">State</a></td><td class="entry"></td></tr>
<tr bgcolor="#f0f0f0"><td class="entry"><b>singleTransitionResize</b>() (defined in <a class="el" href="class_state.html">State</a>)</td><td class="entry"><a class="el" href="class_state.html">State</a></td><td class="entry"><span class="mlabel">inline</span></td></tr>
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<tr bgcolor="#f0f0f0"><td class="entry"><b>suffix_transition_</b> (defined in <a class="el" href="class_state.html">State</a>)</td><td class="entry"><a class="el" href="class_state.html">State</a></td><td class="entry"></td></tr>
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<a href="#pub-methods">Public Member Functions</a> &#124;
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<a href="class_state-members.html">List of all members</a> </div>
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<p><code>#include &lt;<a class="el" href="_factor_oracle_8h_source.html">FactorOracle.h</a>&gt;</code></p>
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Public Member Functions</h2></td></tr>
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void&#160;</td><td class="memItemRight" valign="bottom"><b>singleTransitionResize</b> ()</td></tr>
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Public Attributes</h2></td></tr>
<tr class="memitem:a2dcf672a1560830a8f93b0e9863c6724"><td class="memItemLeft" align="right" valign="top">int&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_state.html#a2dcf672a1560830a8f93b0e9863c6724">state_</a></td></tr>
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<tr class="memitem:afd5b3d2afbba2fc03583f76a7cb08fe8"><td class="memItemLeft" align="right" valign="top">vector&lt; <a class="el" href="class_single_transition.html">SingleTransition</a> &gt;&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="class_state.html#afd5b3d2afbba2fc03583f76a7cb08fe8">transition_</a></td></tr>
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int&#160;</td><td class="memItemRight" valign="bottom"><b>suffix_transition_</b></td></tr>
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int&#160;</td><td class="memItemRight" valign="bottom"><b>lrs_</b> = 0</td></tr>
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<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
<div class="textblock"><p>The class <a class="el" href="class_state.html">State</a> denotes the elements that belong to each state state denotes de number of the state vector &lt;SingleTransition&gt; transition is the vector where all forward links of the state are defined suffix_transition denotes which is the suffix link of this state lrs is the longest repeated subsequence of this state </p>
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<h2 class="memtitle"><span class="permalink"><a href="#a2dcf672a1560830a8f93b0e9863c6724">&#9670;&nbsp;</a></span>state_</h2>
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<td class="memname">int State::state_</td>
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<p>denotes the number of the state </p>
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<h2 class="memtitle"><span class="permalink"><a href="#afd5b3d2afbba2fc03583f76a7cb08fe8">&#9670;&nbsp;</a></span>transition_</h2>
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<td class="memname">vector&lt;<a class="el" href="class_single_transition.html">SingleTransition</a>&gt; State::transition_</td>
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<p>denotes the number of the state </p>
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<hr/>The documentation for this class was generated from the following file:<ul>
<li><a class="el" href="_factor_oracle_8h_source.html">FactorOracle.h</a></li>
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